cwl_utils.file_formats

CWL file formats utilities.

For more information, please visit https://www.commonwl.org/user_guide/16-file-formats/

Module Contents

Functions

formatSubclassOf(fmt, cls, ontology, visited)	Determine if fmt is a subclass of cls.
check_format(actual_file, input_formats, ontology)	Confirm that the format present is valid for the allowed formats.

cwl_utils.file_formats.formatSubclassOf(fmt, cls, ontology, visited)

Determine if fmt is a subclass of cls.

Parameters:

• fmt (str) –

• cls (str) –

• ontology (Optional[rdflib.Graph]) –

• visited (Set[str]) –

Return type:

bool

cwl_utils.file_formats.check_format(actual_file, input_formats, ontology)

Confirm that the format present is valid for the allowed formats.

Parameters:

• actual_file (Union[cwl_utils.types.CWLObjectType, List[cwl_utils.types.CWLObjectType]]) –

• input_formats (Union[List[str], str]) –

• ontology (Optional[rdflib.Graph]) –

Return type:

None